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Bayesian inference and model choice in a hidden stochastic two-compartment model of hematopoietic stem cell fate decisions

机译:隐式随机变量中的贝叶斯推理与模型选择   两室模型的造血干细胞命运决定

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摘要

Despite rapid advances in experimental cell biology, the in vivo behavior ofhematopoietic stem cells (HSC) cannot be directly observed and measured.Previously we modeled feline hematopoiesis using a two-compartment hiddenMarkov process that had birth and emigration events in the first compartment.Here we perform Bayesian statistical inference on models which contain twoadditional events in the first compartment in order to determine if HSC fatedecisions are linked to cell division or occur independently. Pareto OptimalModel Assessment approach is used to cross check the estimates from Bayesianinference. Our results show that HSC must divide symmetrically (i.e., producetwo HSC daughter cells) in order to maintain hematopoiesis. We then demonstratethat the augmented model that adds asymmetric division events provides a betterfit to the competitive transplantation data, and we thus provide evidence thatHSC fate determination in vivo occurs both in association with cell divisionand at a separate point in time. Last we show that assuming each cat has aunique set of parameters leads to either a significant decrease or anonsignificant increase in model fit, suggesting that the kinetic parametersfor HSC are not unique attributes of individual animals, but shared within aspecies.
机译:尽管实验细胞生物学取得了飞速发展,但造血干细胞(HSC)的体内行为仍无法直接观察和测量。以前,我们使用两室隐马尔可夫过程对猫造血进行建模,该过程在第一个隔室中发生了出生和移民事件。对在第一个区室中包含两个附加事件的模型进行贝叶斯统计推断,以确定HSC肥胖症是否与细胞分裂有关或独立发生。使用帕累托最优模型评估方法对来自贝叶斯推断的估计值进行交叉检查。我们的结果表明,HSC必须对称分裂(即产生两个HSC子细胞)才能维持造血作用。然后,我们证明增加不对称分裂事件的增强模型为竞争性移植数据提供了更好的拟合,因此我们提供了证据,证明体内HSC命运确定与细胞分裂有关并且发生在单独的时间点。最后,我们证明了假设每只猫都有一组独特的参数会导致模型拟合显着降低或不显着增加,这表明HSC的动力学参数不是单个动物的独特属性,而是在种内共享。

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